A Bayesian space-time model for discrete spread processes on a lattice

Funding for this work was provided by GEOIDE through the Government of Canada’s Networks for Centres of Excellence program.In this article we present a Bayesian Markov model for investigating environmental spread processes. We formulate a model where the spread of a disease over a heterogeneous landscape through time is represented as a probabilistic function of two processes: local diffusion and random-jump dispersal. This formulation represents two mechanisms of spread which result in highly peaked and long-tailed distributions of dispersal distances (i.e., local and long-distance spread), commonly observed in the spread of infectious diseases and biological invasions. We demonstrate the properties of this model using a simulation experiment and an empirical case study - the spread of mountain pine beetle in western Canada. Posterior predictive checking was used to validate the number of newly inhabited regions in each time period. The model performed well in the simulation study in which a goodness-of-fit statistic measuring the number of newly inhabited regions in each time interval fell within the 95% posterior predictive credible interval in over 97% of simulations. The case study of a mountain pine beetle infestation in western Canada (1999-2009) extended the base model in two ways. First, spatial covariates thought to impact the local diffusion parameters, elevation and forest cover, were included in the model. Second, a refined definition for translocation or jump-dispersal based on mountain pine beetle ecology was incorporated improving the fit of the model. Posterior predictive checks on the mountain pine beetle model found that the observed goodness-of-fit test statistic fell within the 95% posterior predictive credible interval for 8 out of 10. years. The simulation study and case study provide evidence that the model presented here is both robust and flexible; and is therefore appropriate for a wide range of spread processes in epidemiology and ecology.PostprintPeer reviewe

Toward a kinetic-based probabilistic time geography

Time geography represents a powerful framework for the quantitative analysis of individual movement. Time geography effectively delineates the space–time boundaries of possible individual movement by characterizing movement constraints. The goal of this paper is to synchronize two new ideas, probabilistic time geography and kinetic-based time geography, to develop a more realistic set of movement constraints that consider movement probabilities related to object kinetics. Using random-walk theory, the existing probabilistic time geography model characterizes movement probabilities for the space–time cone using a normal distribution. The normal distribution has a symmetric probability density function and is an appropriate model in the absence of skewness – which we relate to an object’s initial velocity. Moving away from a symmetric distribution for movement probabilities, we propose the use of the skew-normal distribution to model kinetic-based movement probabilities, where the degree and direction of skewness is related to movement direction and speed. Following a description of our model, we use a set of case-studies to demonstrate the skew-normal model: a random walk, a correlated random walk, wildlife data, cyclist data, and athlete movement data. Our results show that for objects characterized by random movement behavior, the existing model performs well, but for object movement with kinetic properties (e.g., athletes), the proposed model provides a substantial improvement. Future work will look to extend the proposed probabilistic framework to the space–time prism.PostprintPeer reviewe

A Bayesian space-time model for discrete spread processes on a lattice

In this article we present a Bayesian Markov model for investigating environmental spread processes. We formulate a model where the spread of a disease over a heterogeneous landscape through time is represented as a probabilistic function of two processes: local diffusion and random-jump dispersal. This formulation represents two mechanisms of spread which result in highly peaked and long-tailed distributions of dispersal distances (i.e., local and long-distance spread), commonly observed in the spread of infectious diseases and biological invasions. We demonstrate the properties of this model using a simulation experiment and an empirical case study - the spread of mountain pine beetle in western Canada. Posterior predictive checking was used to validate the number of newly inhabited regions in each time period. The model performed well in the simulation study in which a goodness-of-fit statistic measuring the number of newly inhabited regions in each time interval fell within the 95% posterior predictive credible interval in over 97% of simulations. The case study of a mountain pine beetle infestation in western Canada (1999-2009) extended the base model in two ways. First, spatial covariates thought to impact the local diffusion parameters, elevation and forest cover, were included in the model. Second, a refined definition for translocation or jump-dispersal based on mountain pine beetle ecology was incorporated improving the fit of the model. Posterior predictive checks on the mountain pine beetle model found that the observed goodness-of-fit test statistic fell within the 95% posterior predictive credible interval for 8 out of 10. years. The simulation study and case study provide evidence that the model presented here is both robust and flexible; and is therefore appropriate for a wide range of spread processes in epidemiology and ecology

Magnetic resonance imaging of solitary brain metastases: main findings of nonmorphological sequences

This study was done to investigate the usefulness of diffusion-weighted (DWI), perfusion-weighted (PWI) and proton magnetic resonance (MR) spectroscopy imaging in characterising solitary brain metastases